Index

_

__init__() (msAI.errors.MetadataError method) (msAI.errors.MetadataIndexError method) (msAI.errors.MetadataInitError method) (msAI.errors.MetadataVerifyError method) (msAI.errors.MiscUtilsError method) (msAI.errors.MSdataError method) (msAI.errors.MSfileSetInitError method) (msAI.errors.RootError method) (msAI.errors.SampleRunError method) (msAI.errors.SampleRunMSinitError method) (msAI.metadata.SampleMetadata method) (msAI.msData.MSfile method) (msAI.msData.MSfileSet method) (msAI.msData.MZMLfile method) (msAI.samples.SampleRun method) (msAI.samples.SampleSet method) __repr__() (msAI.metadata.SampleMetadata method) _auto_index() (msAI.metadata.SampleMetadata method) _create_dfs() (msAI.msData.MZMLfile method) _create_samplerun_mpf() (msAI.samples.SampleSet static method) _create_sampleruns() (msAI.samples.SampleSet method) _create_sampleruns_mp() (msAI.samples.SampleSet method) _create_sampleruns_sp() (msAI.samples.SampleSet method) _create_spectrum_df() (msAI.msData.MZMLfile method) _create_spectrum_peaks_df() (msAI.msData.MZMLfile method) _hf (msAI.metadata.SampleMetadata attribute) _init_all_ms_mp() (msAI.samples.SampleSet method)

_init_all_ms_sp() (msAI.samples.SampleSet method) _init_ms_mpf() (msAI.samples.SampleSet static method) _metadata (msAI.samples.SampleRun attribute) _ms (msAI.samples.SampleRun attribute) _ms_file_version (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _partition_by_rows() (msAI.miscUtils.MultiTaskDF static method) _peak_count (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _peaks (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _run_date (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _run_id (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _run_on_subset_rows() (msAI.miscUtils.MultiTaskDF static method) _save_all_ms_mp() (msAI.samples.SampleSet method) _save_all_ms_sp() (msAI.samples.SampleSet method) _save_ms_mpf() (msAI.samples.SampleSet static method) _set_run_metadata() (msAI.samples.SampleSet static method) _spectra (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _spectrum_count (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _tic_sum (msAI.msData.MSfile attribute) (msAI.msData.MZMLfile attribute) _verify_import() (msAI.metadata.SampleMetadata method)

A

all() (msAI.miscUtils.EnvInfo static method)

D

describe() (msAI.metadata.SampleMetadata method) DEV (msAI.__init__.LogMode attribute) DF (in module msAI.types)

df (msAI.metadata.SampleMetadata attribute) df() (msAI.msData.MSfileSet property) (msAI.samples.SampleSet property)

E

EnvInfo (class in msAI.miscUtils)

F

file_mb() (msAI.miscUtils.Sizer static method) file_path (msAI.metadata.SampleMetadata attribute) (msAI.samples.SampleRun attribute)

FileGrabber (class in msAI.miscUtils)

G

get_hash() (msAI.miscUtils.Saver static method)

I

init_all_ms() (msAI.samples.SampleSet method)

init_ms() (msAI.samples.SampleRun method)

L

LIB (msAI.__init__.LogMode attribute) load_obj() (msAI.miscUtils.Saver static method) log_timer() (in module msAI.miscDecos) logger (in module msAI.errors) (in module msAI.metadata) (in module msAI.miscDecos) (in module msAI.miscUtils) (in module msAI.msData) (in module msAI.samples) (in module msAI.types)

LogMode (class in msAI.__init__)

M

message (msAI.errors.MetadataError attribute) (msAI.errors.MetadataIndexError attribute) (msAI.errors.MetadataInitError attribute) (msAI.errors.MetadataVerifyError attribute) (msAI.errors.MiscUtilsError attribute) (msAI.errors.msAIerror attribute) (msAI.errors.MSdataError attribute) (msAI.errors.MSfileSetInitError attribute) (msAI.errors.RootError attribute) (msAI.errors.SampleRunError attribute) (msAI.errors.SampleRunMSinitError attribute) metadata() (msAI.samples.SampleRun property) MetadataError MetadataIndexError MetadataInitError MetadataVerifyError MetaDF() (in module msAI.types) MiscUtilsError mp_method() (msAI.miscUtils.EnvInfo static method) ms() (msAI.samples.SampleRun property)

ms_file_version() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property) msAI.__init__ (module) msAI.errors (module) msAI.metadata (module) msAI.miscDecos (module) msAI.miscUtils (module) msAI.msData (module) msAI.samples (module) msAI.types (module) msAIerror msAIr_exts (msAI.msData.MSfileSet attribute) msAIr_hash() (msAI.samples.SampleRun property) MSdataError MSfile (class in msAI.msData) MSfileSet (class in msAI.msData) MSfileSetInitError multi_extensions() (msAI.miscUtils.FileGrabber static method) MultiTaskDF (class in msAI.miscUtils) mzML_exts (msAI.msData.MSfileSet attribute) MZMLfile (class in msAI.msData)

N

NONE (msAI.__init__.LogMode attribute)

O

obj_mb() (msAI.miscUtils.Sizer static method)

os() (msAI.miscUtils.EnvInfo static method)

P

parallelize_on_rows() (msAI.miscUtils.MultiTaskDF static method) path_type() (msAI.miscUtils.FileGrabber static method) peak_count() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property) peaks() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property)

platform() (msAI.miscUtils.EnvInfo static method) print_file_mb() (msAI.miscUtils.Sizer static method) print_obj_mb() (msAI.miscUtils.Sizer static method) python() (msAI.miscUtils.EnvInfo static method)

R

RELEASE (msAI.__init__.LogMode attribute) RootError run_date() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property)

run_id() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property)

S

SampleMetadata (class in msAI.metadata) SampleRun (class in msAI.samples) SampleRunError SampleRunMSinitError SampleSet (class in msAI.samples) save() (msAI.samples.SampleRun method) save_all_ms() (msAI.samples.SampleSet method) save_metadata() (msAI.samples.SampleSet method) save_obj() (msAI.miscUtils.Saver static method)

Saver (class in msAI.miscUtils) Series() (in module msAI.types) set_index() (msAI.metadata.SampleMetadata method) set_logging() (in module msAI.__init__) set_mp_support() (in module msAI.__init__) Sizer (class in msAI.miscUtils) spectra() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property) spectrum_count() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property)

T

tic_sum() (msAI.msData.MSfile property) (msAI.msData.MZMLfile property)

V

verify_hash() (msAI.miscUtils.Saver static method)